PH01000680G0700's details annotation
1.Annotation
ICBR annotation: dual specificity protein phosphatase, putative, expressed
Blast result AT3G55270 : 1.00E-173
Blast annotation: mitogen-activated protein kinase phosphatase 1
2.Location
Scaffold: PH01000680
Strand: +
| Region | Start | End |
| gene | 460661 | 464652 |
| mRNA | 460661 | 464652 |
| exon | 460661 | 464652 |
| CDS | 462137 | 464440 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000758 | protein homooligomerization, protein tyrosine/serine/threonine phosphatase activity, protein tyrosine phosphatase activity, phosphatase activity, dephosphorylation, protein dephosphorylation, |
| coexpression network | CFinderM000830 | cytoskeleton, proton-transporting ATP synthase complex, catalytic core F(1), phagocytosis, branched chain family amino acid biosynthetic process, signal peptide processing, phosphoacetylglucosamine mutase activity, Other_glycan_degradation |
| coexpression network | CFinderM000831 | ER_membrane_protein_complex Protein_export branched chain family amino acid biosynthetic process, signal peptide processing, dephosphorylation, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, acetolactate synthase activity, peptidase activity, phosphatase activity, protein dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00782.19 | DSPc | 154 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.