PH01000681G0020's details annotation
1.Annotation
ICBR annotation: transcription elongation factor protein, putative, expressed
Blast result AT2G38560 : 3.20E-67
Blast annotation: transcript elongation factor IIS
2.Location
Scaffold: PH01000681
Strand: -
| Region | Start | End |
| gene | 11954 | 19151 |
| mRNA | 11954 | 19151 |
| exon | 11954 | 15095 |
| exon | 17703 | 19151 |
| CDS | 14231 | 15095 |
| CDS | 17703 | 17929 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07500.13 | TFIIS_M | 186 | 310 |
| PF01096.17 | TFIIS_C | 323 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0008270 | zinc ion binding |
| GO:0032784 | regulation of DNA-dependent transcription, elongation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.