PH01000683G0020's details annotation
1.Annotation
ICBR annotation: transketolase, putative, expressed
Blast result AT4G15560 : 1.00E-123
Blast annotation: Deoxyxylulose-5-phosphate synthase
2.Location
Scaffold: PH01000683
Strand: +
| Region | Start | End |
| gene | 10300 | 11979 |
| mRNA | 10300 | 11979 |
| exon | 10300 | 10835 |
| exon | 10924 | 11424 |
| exon | 11797 | 11979 |
| CDS | 10383 | 10835 |
| CDS | 10924 | 11424 |
| CDS | 11797 | 11943 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000371 | apoplast, lignin catabolic process, hydroquinone:oxygen_oxidoreductase_activity |
| coexpression network | CFinderM000737 | TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02779.23 | Transket_pyr | 1 | 135 |
| PF02780.19 | Transketolase_C | 225 | 348 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.