Annotation of co-expression genes

PH01000684G0090's details annotation

1.Annotation

ICBR annotation: single myb histone, putative, expressed

Blast result AT1G49950 : 2.30E-57
Blast annotation: telomere repeat binding factor 1

2.Location

Scaffold: PH01000684
Strand: +

RegionStartEnd
gene5902764203
mRNA5902764203
exon5902759590
exon6109161317
exon6290362987
exon6322363306
exon6341464203
CDS5944159590
CDS6109161317
CDS6290362987
CDS6322363306
CDS6341463755

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000031
coexpression networkCFinderM000279nucleosome assembly,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
NAD+ ADP-ribosyltransferase activity,
nucleosome,
coexpression networkCFinderM000377ARR-B Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000541nucleus,
nucleosome,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding556
PF00538.18Linker_histone128184

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000786nucleosome
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0005634nucleus
GO:0006334nucleosome assembly

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.