Annotation of co-expression genes

PH01000685G0780's details annotation

1.Annotation

ICBR annotation: dnaJ homolog subfamily B member 11 precursor, putative, expressed

Blast result AT3G62600 : 1.00E-122
Blast annotation: DNAJ heat shock family protein

2.Location

Scaffold: PH01000685
Strand: +

RegionStartEnd
gene527408532199
mRNA527408532199
exon527408527694
exon527966528114
exon528207528333
exon529311529428
exon529648529764
exon529932530018
exon530801530860
exon531619531690
exon531787532199
CDS527615527694
CDS527966528114
CDS528207528333
CDS529311529428
CDS529648529764
CDS529932530018
CDS530801530860
CDS531619531690
CDS531787531945

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001142
coexpression networkCFinderM001249glycerol ether metabolic process,
cell redox homeostasis,
protein disulfide oxidoreductase activity,
electron carrier activity,
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00226.30DnaJ3091
PF01556.17DnaJ_C142250
PF01556.17DnaJ_C249306

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumDnaJ homolog subfamily B member 11ko04141K09517

10.Gene Ontology

GO AccessionGO Annotation
GO:0006457protein folding
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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