PH01000688G0230's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolases family 17, putative, expressed
Blast result AT2G27500 : 4.90E-89
Blast annotation: Glycosyl hydrolase superfamily protein
2.Location
Scaffold: PH01000688
Strand: -
| Region | Start | End |
| gene | 155986 | 163835 |
| mRNA | 155986 | 163835 |
| exon | 155986 | 156574 |
| exon | 156760 | 156839 |
| exon | 157868 | 157975 |
| exon | 158628 | 158999 |
| exon | 159079 | 159713 |
| exon | 160719 | 161004 |
| exon | 161060 | 161280 |
| exon | 163639 | 163835 |
| CDS | 156295 | 156574 |
| CDS | 156760 | 156839 |
| CDS | 157868 | 157975 |
| CDS | 158628 | 158999 |
| CDS | 159079 | 159713 |
| CDS | 160719 | 161004 |
| CDS | 161060 | 161280 |
| CDS | 163639 | 163702 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000517 | RLK-Pelle_LRR-Xb-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 221 | 381 |
| PF00332.17 | Glyco_hydro_17 | 402 | 505 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.