PH01000688G0550's details annotation
1.Annotation
ICBR annotation: solute carrier family 35 member F2, putative, expressed
Blast result AT3G59340 : 2.00E-37
Blast annotation: Eukaryotic protein of unknown function (DUF914)
2.Location
Scaffold: PH01000688
Strand: +
| Region | Start | End |
| gene | 374545 | 379212 |
| mRNA | 374545 | 379212 |
| exon | 374545 | 374997 |
| exon | 375128 | 375222 |
| exon | 375303 | 375360 |
| exon | 375448 | 375642 |
| exon | 377737 | 377816 |
| exon | 378342 | 378410 |
| exon | 378800 | 378864 |
| exon | 378901 | 379212 |
| CDS | 374883 | 374997 |
| CDS | 375128 | 375222 |
| CDS | 375303 | 375360 |
| CDS | 375448 | 375642 |
| CDS | 377737 | 377816 |
| CDS | 378342 | 378410 |
| CDS | 378800 | 378864 |
| CDS | 378901 | 379102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000542 | Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate protein glycosylation, GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000799 | biotin biosynthetic process, cofactor metabolic process, biotin synthase activity, Biotin_metabolism iron-sulfur cluster binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06027.11 | SLC35F | 10 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.