PH01000692G0590's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT1G72650 : 1.10E-69
Blast annotation: TRF-like 6
2.Location
Scaffold: PH01000692
Strand: +
| Region | Start | End |
| gene | 401386 | 406927 |
| mRNA | 401386 | 406927 |
| exon | 401386 | 401846 |
| exon | 402165 | 402330 |
| exon | 402526 | 402587 |
| exon | 403120 | 403176 |
| exon | 403437 | 404399 |
| exon | 405651 | 405734 |
| exon | 405948 | 406208 |
| exon | 406283 | 406927 |
| CDS | 401745 | 401846 |
| CDS | 402165 | 402330 |
| CDS | 402526 | 402587 |
| CDS | 403120 | 403176 |
| CDS | 403437 | 404399 |
| CDS | 405651 | 405734 |
| CDS | 405948 | 406208 |
| CDS | 406283 | 406642 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000696 | snRNA_pseudouridine_synthesis snoRNA binding, ribosome biogenesis, MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.