Annotation of co-expression genes

PH01000692G0600's details annotation

1.Annotation

ICBR annotation: RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed

Blast result AT2G06510 : 0.00E+00
Blast annotation: replication protein A 1A

2.Location

Scaffold: PH01000692
Strand: -

RegionStartEnd
gene407271412071
mRNA407271412071
exon407271409120
exon410373412071
CDS407437409120
CDS410373410662

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001096RLK-Pelle_LRR-VI-2 (from iTAK)
Flavone_and_flavonol_biosynthesis
Mismatch_repair
Nucleotide_excision_repair
Homologous_recombination
DNA_replication
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
DNA_replication

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04057.11Rep-A_N11109
PF01336.24tRNA_anti-codon226308
PF16900.4REPA_OB_2335439
PF08646.9Rep_fac-A_C497646

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
DNA replicationreplication factor A1ko03030K07466
Nucleotide excision repairreplication factor A1ko03420K07466
Mismatch repairreplication factor A1ko03430K07466
Homologous recombinationreplication factor A1ko03440K07466

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0005634nucleus
GO:0006260DNA replication

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.