PH01000693G0360's details annotation
1.Annotation
ICBR annotation: peroxisome assembly protein 12, putative, expressed
Blast result AT3G04460 : 5.10E-68
Blast annotation: peroxin-12
2.Location
Scaffold: PH01000693
Strand: -
| Region | Start | End |
| gene | 212627 | 220760 |
| mRNA | 212627 | 220760 |
| exon | 212627 | 212783 |
| exon | 213106 | 213192 |
| exon | 213536 | 213622 |
| exon | 213722 | 213779 |
| exon | 214061 | 214170 |
| exon | 214699 | 214791 |
| exon | 217947 | 218095 |
| exon | 218789 | 218894 |
| exon | 220343 | 220760 |
| CDS | 212772 | 212783 |
| CDS | 213106 | 213192 |
| CDS | 213536 | 213622 |
| CDS | 213722 | 213779 |
| CDS | 214061 | 214170 |
| CDS | 214699 | 214791 |
| CDS | 217947 | 218095 |
| CDS | 218789 | 218894 |
| CDS | 220343 | 220402 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04757.13 | Pex2_Pex12 | 4 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005779 | integral to peroxisomal membrane |
| GO:0006625 | protein targeting to peroxisome |
| GO:0008022 | protein C-terminus binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.