PH01000693G0390's details annotation
1.Annotation
ICBR annotation: CESA7 - cellulose synthase, expressed
Blast result AT5G44030 : 1.80E-95
Blast annotation: cellulose synthase A4
2.Location
Scaffold: PH01000693
Strand: -
| Region | Start | End |
| gene | 237316 | 240345 |
| mRNA | 237316 | 240345 |
| exon | 237316 | 237493 |
| exon | 238251 | 238601 |
| exon | 238641 | 238736 |
| exon | 238805 | 239377 |
| exon | 239466 | 239729 |
| exon | 239771 | 240345 |
| CDS | 237485 | 237493 |
| CDS | 238251 | 238601 |
| CDS | 238641 | 238736 |
| CDS | 238805 | 239377 |
| CDS | 239466 | 239729 |
| CDS | 239771 | 239944 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03552.13 | Cellulose_synt | 1 | 345 |
| PF03552.13 | Cellulose_synt | 369 | 487 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.