PH01000696G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G76850 : 8.00E-155
Blast annotation: exocyst complex component sec5
2.Location
Scaffold: PH01000696
Strand: +
| Region | Start | End |
| gene | 41857 | 54995 |
| mRNA | 41857 | 54995 |
| exon | 41857 | 49022 |
| exon | 49917 | 50071 |
| exon | 50941 | 51038 |
| exon | 51124 | 51318 |
| exon | 51510 | 51637 |
| exon | 51740 | 51898 |
| exon | 52288 | 52326 |
| exon | 52396 | 52470 |
| exon | 52812 | 52994 |
| exon | 53313 | 53468 |
| exon | 53575 | 54995 |
| CDS | 48621 | 49022 |
| CDS | 49917 | 50071 |
| CDS | 50941 | 51038 |
| CDS | 51124 | 51318 |
| CDS | 51510 | 51637 |
| CDS | 51740 | 51898 |
| CDS | 52288 | 52326 |
| CDS | 52396 | 52470 |
| CDS | 52812 | 52994 |
| CDS | 53313 | 53468 |
| CDS | 53575 | 53721 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15469.5 | Sec5 | 262 | 392 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.