PH01000698G0330's details annotation
1.Annotation
ICBR annotation: immature colon carcinoma transcript 1 protein precursor, putative, expressed
Blast result AT1G62850 : 1.60E-59
Blast annotation: Class I peptide chain release factor
2.Location
Scaffold: PH01000698
Strand: -
| Region | Start | End |
| gene | 241828 | 251094 |
| mRNA | 241828 | 251094 |
| exon | 241828 | 242882 |
| exon | 245185 | 245255 |
| exon | 245361 | 245421 |
| exon | 245466 | 245530 |
| exon | 245731 | 245813 |
| exon | 246151 | 246246 |
| exon | 248118 | 251094 |
| CDS | 242792 | 242882 |
| CDS | 245185 | 245255 |
| CDS | 245361 | 245421 |
| CDS | 245466 | 245530 |
| CDS | 245731 | 245813 |
| CDS | 246151 | 246246 |
| CDS | 248118 | 248373 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00472.19 | RF-1 | 98 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003747 | translation release factor activity |
| GO:0006415 | translational termination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.