PH01000698G0550's details annotation
1.Annotation
ICBR annotation: autophagy protein 9, putative, expressed
Blast result AT2G31260 : 6.00E-144
Blast annotation: autophagy 9 (APG9)
2.Location
Scaffold: PH01000698
Strand: +
| Region | Start | End |
| gene | 361081 | 371737 |
| mRNA | 361081 | 371737 |
| exon | 361081 | 364624 |
| exon | 364707 | 365027 |
| exon | 365579 | 365938 |
| exon | 366726 | 366948 |
| exon | 367178 | 367357 |
| exon | 367443 | 367649 |
| exon | 368229 | 368306 |
| exon | 368383 | 368663 |
| exon | 369369 | 370221 |
| exon | 371388 | 371737 |
| CDS | 364053 | 364624 |
| CDS | 364707 | 365027 |
| CDS | 365579 | 365938 |
| CDS | 366726 | 366948 |
| CDS | 367178 | 367357 |
| CDS | 367443 | 367649 |
| CDS | 368229 | 368306 |
| CDS | 368383 | 368663 |
| CDS | 369369 | 370221 |
| CDS | 371388 | 371699 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000866 | Regulation_of_autophagy autophagy, protein metabolic process, IWS1 Transcription_Regulator(from iTAK) transcription, DNA-dependent, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04109.15 | APG9 | 198 | 298 |
| PF04109.15 | APG9 | 430 | 673 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.