PH01000700G0550's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT5G22480 : 2.00E-177
Blast annotation: ZPR1 zinc-finger domain protein
2.Location
Scaffold: PH01000700
Strand: +
| Region | Start | End |
| gene | 431465 | 441022 |
| mRNA | 431465 | 441022 |
| exon | 431465 | 435161 |
| exon | 435261 | 435305 |
| exon | 435393 | 435433 |
| exon | 435561 | 435642 |
| exon | 436468 | 436512 |
| exon | 436602 | 436658 |
| exon | 436762 | 436821 |
| exon | 436903 | 437030 |
| exon | 437353 | 437620 |
| exon | 437952 | 438086 |
| exon | 438192 | 438281 |
| exon | 438986 | 439094 |
| exon | 439734 | 439825 |
| exon | 440251 | 440356 |
| exon | 440824 | 441022 |
| CDS | 435030 | 435161 |
| CDS | 435261 | 435305 |
| CDS | 435393 | 435433 |
| CDS | 435561 | 435642 |
| CDS | 436468 | 436512 |
| CDS | 436602 | 436658 |
| CDS | 436762 | 436821 |
| CDS | 436903 | 437030 |
| CDS | 437353 | 437620 |
| CDS | 437952 | 438086 |
| CDS | 438192 | 438281 |
| CDS | 438986 | 439094 |
| CDS | 439734 | 439825 |
| CDS | 440251 | 440356 |
| CDS | 440824 | 440924 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000753 | GH27 Glycoside_Hydrolases Glycosphingolipid_biosynthesis_-_globo_series Sphingolipid_metabolism Glycerolipid_metabolism Galactose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03367.12 | zf-ZPR1 | 36 | 195 |
| PF03367.12 | zf-ZPR1 | 306 | 449 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.