Annotation of co-expression genes

PH01000701G0030's details annotation

1.Annotation

ICBR annotation: HSF-type DNA-binding domain containing protein, expressed

Blast result AT3G24520 : 8.40E-44
Blast annotation: heat shock transcription factor C1

2.Location

Scaffold: PH01000701
Strand: -

RegionStartEnd
gene1544317988
mRNA1544317988
exon1544316894
exon1698617226
exon1765117988
CDS1639416894
CDS1698617226
CDS1765117799

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000092HSF Transcription_Regulator(from PlantTFDB)
metal ion transport,
nucleus,
PHD Transcription_Regulator(from iTAK)
CAMK_CDPK (from iTAK)
coexpression networkCFinderM000203HSF Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000325HSF Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HSF
Transcription_Regulator(from PlantTFDB)HSF

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00447.16HSF_DNA-bind72161

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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