PH01000704G0630's details annotation
1.Annotation
ICBR annotation: phosphatidylserine synthase, putative, expressed
Blast result AT1G15110 : 1.00E-152
Blast annotation: phosphatidyl serine synthase family protein
2.Location
Scaffold: PH01000704
Strand: +
| Region | Start | End |
| gene | 408933 | 417328 |
| mRNA | 408933 | 417328 |
| exon | 408933 | 409747 |
| exon | 411471 | 411721 |
| exon | 412611 | 412673 |
| exon | 413625 | 413715 |
| exon | 414220 | 414274 |
| exon | 414372 | 414451 |
| exon | 414542 | 414658 |
| exon | 414766 | 414850 |
| exon | 415366 | 415457 |
| exon | 415725 | 415793 |
| exon | 416418 | 416671 |
| exon | 416992 | 417328 |
| CDS | 409550 | 409747 |
| CDS | 411471 | 411721 |
| CDS | 412611 | 412673 |
| CDS | 413625 | 413715 |
| CDS | 414220 | 414274 |
| CDS | 414372 | 414451 |
| CDS | 414542 | 414658 |
| CDS | 414766 | 414850 |
| CDS | 415366 | 415457 |
| CDS | 415725 | 415793 |
| CDS | 416418 | 416671 |
| CDS | 416992 | 417106 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03034.14 | PSS | 176 | 459 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | phosphatidylserine synthase 2 [EC:2.7.8.29] | ko00564 | K08730 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006659 | phosphatidylserine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.