PH01000706G0060's details annotation
1.Annotation
ICBR annotation: DCN1-like protein 2, putative, expressed
Blast result AT3G12760 : 4.00E-106
Blast annotation: -
2.Location
Scaffold: PH01000706
Strand: -
| Region | Start | End |
| gene | 40152 | 46409 |
| mRNA | 40152 | 46409 |
| exon | 40152 | 40451 |
| exon | 40766 | 40825 |
| exon | 40928 | 41029 |
| exon | 42872 | 42921 |
| exon | 43084 | 43148 |
| exon | 43259 | 43341 |
| exon | 43742 | 43765 |
| exon | 44245 | 44303 |
| exon | 44445 | 44578 |
| exon | 45507 | 45568 |
| exon | 45804 | 46409 |
| CDS | 40341 | 40451 |
| CDS | 40766 | 40825 |
| CDS | 40928 | 41029 |
| CDS | 42872 | 42921 |
| CDS | 43084 | 43148 |
| CDS | 43259 | 43341 |
| CDS | 43742 | 43765 |
| CDS | 44245 | 44303 |
| CDS | 44445 | 44578 |
| CDS | 45507 | 45568 |
| CDS | 45804 | 45806 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14555.5 | UBA_4 | 9 | 48 |
| PF03556.14 | Cullin_binding | 128 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.