PH01000706G0340's details annotation
1.Annotation
ICBR annotation: BAH domain containing protein, putative, expressed
Blast result AT3G48060 : 0.00E+00
Blast annotation: BAH domain ;TFIIS helical bundle-like domain
2.Location
Scaffold: PH01000706
Strand: -
| Region | Start | End |
| gene | 279070 | 286617 |
| mRNA | 279070 | 286617 |
| exon | 279070 | 283588 |
| exon | 283660 | 284028 |
| exon | 286048 | 286617 |
| CDS | 279191 | 283588 |
| CDS | 283660 | 284028 |
| CDS | 286048 | 286302 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000866 | Regulation_of_autophagy autophagy, protein metabolic process, IWS1 Transcription_Regulator(from iTAK) transcription, DNA-dependent, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | IWS1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01426.17 | BAH | 90 | 196 |
| PF08711.10 | Med26 | 398 | 447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.