Annotation of co-expression genes

PH01000706G0380's details annotation

1.Annotation

ICBR annotation: nucleobase-ascorbate transporter, putative, expressed

Blast result AT5G62890 : 0
Blast annotation: Xanthine/uracil permease family protein

2.Location

Scaffold: PH01000706
Strand: +

RegionStartEnd
gene325137331729
mRNA325137331729
exon325137325594
exon325913325928
exon326124326258
exon327200327284
exon327438327614
exon327703327803
exon327936328011
exon328094328153
exon328257328441
exon328545328641
exon328751328837
exon328933328991
exon329117329208
exon330976331053
exon331251331318
exon331392331729
CDS325477325594
CDS325913325928
CDS326124326258
CDS327200327284
CDS327438327614
CDS327703327803
CDS327936328011
CDS328094328153
CDS328257328441
CDS328545328641
CDS328751328837
CDS328933328991
CDS329117329208
CDS330976331053
CDS331251331318
CDS331392331598

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000006CAMK_CDPK (from iTAK)
transporter activity,
transport,
transmembrane transport,
polygalacturonase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00860.19Xan_ur_permease120456

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.