PH01000707G0840's details annotation
1.Annotation
ICBR annotation: Der1-like family domain containing protein, expressed
Blast result AT4G21810 : 3.60E-29
Blast annotation: DERLIN-2.1
2.Location
Scaffold: PH01000707
Strand: -
| Region | Start | End |
| gene | 493266 | 497403 |
| mRNA | 493266 | 497403 |
| exon | 493266 | 494345 |
| exon | 495669 | 495768 |
| exon | 495914 | 497403 |
| CDS | 493780 | 494345 |
| CDS | 495669 | 495768 |
| CDS | 495914 | 496012 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04511.14 | DER1 | 12 | 69 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | Derlin-2/3 | ko04141 | K13989 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.