PH01000708G0520's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G55290 : 1.00E-25
Blast annotation: ATPase, V0 complex, subunit E
2.Location
Scaffold: PH01000708
Strand: +
| Region | Start | End |
| gene | 295922 | 298854 |
| mRNA | 295922 | 298854 |
| exon | 295922 | 296643 |
| exon | 297331 | 297378 |
| exon | 298709 | 298854 |
| CDS | 296546 | 296643 |
| CDS | 297331 | 297378 |
| CDS | 298709 | 298772 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001337 | GT41 GlycosylTransferases DDT Transcription_Regulator(from iTAK) proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, RNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05493.12 | ATP_synt_H | 3 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit H [EC:3.6.3.14] | ko00190 | K02153 |
| Phagosome | V-type H+-transporting ATPase subunit H [EC:3.6.3.14] | ko04145 | K02153 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.