PH01000710G0370's details annotation
1.Annotation
ICBR annotation: cysteine proteinase EP-B 2 precursor, putative
Blast result AT4G11310 : 1.30E-36
Blast annotation: Papain family cysteine protease
2.Location
Scaffold: PH01000710
Strand: -
| Region | Start | End |
| gene | 220083 | 221859 |
| mRNA | 220083 | 221859 |
| exon | 220083 | 221331 |
| exon | 221427 | 221577 |
| exon | 221658 | 221859 |
| CDS | 220730 | 221331 |
| CDS | 221427 | 221577 |
| CDS | 221658 | 221813 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000288 | RLK-Pelle_DLSV (from iTAK) protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, protein phosphorylation, ATP binding, GH17 Glycoside_Hydrolases RLK-Pelle_SD-2b (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00112.22 | Peptidase_C1 | 81 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.