PH01000710G0750's details annotation
1.Annotation
ICBR annotation: ThiF family domain containing protein, putative, expressed
Blast result AT5G45900 : 2.00E-175
Blast annotation: ThiF family protein
2.Location
Scaffold: PH01000710
Strand: +
| Region | Start | End |
| gene | 464954 | 471653 |
| mRNA | 464954 | 471653 |
| exon | 464954 | 465831 |
| exon | 466476 | 466672 |
| exon | 466764 | 466955 |
| exon | 467055 | 467109 |
| exon | 467221 | 467315 |
| exon | 467459 | 467645 |
| exon | 467737 | 467827 |
| exon | 467902 | 468043 |
| exon | 468159 | 468308 |
| exon | 468387 | 468575 |
| exon | 468782 | 468967 |
| exon | 469081 | 469196 |
| exon | 469359 | 469506 |
| exon | 469587 | 469808 |
| exon | 469900 | 470049 |
| exon | 470132 | 470320 |
| exon | 470395 | 470577 |
| exon | 470675 | 470790 |
| exon | 470869 | 471016 |
| exon | 471119 | 471653 |
| CDS | 465678 | 465831 |
| CDS | 466476 | 466672 |
| CDS | 466764 | 466955 |
| CDS | 467055 | 467109 |
| CDS | 467221 | 467315 |
| CDS | 467459 | 467645 |
| CDS | 467737 | 467827 |
| CDS | 467902 | 468043 |
| CDS | 468159 | 468308 |
| CDS | 468387 | 468575 |
| CDS | 468782 | 468967 |
| CDS | 469081 | 469196 |
| CDS | 469359 | 469506 |
| CDS | 469587 | 469808 |
| CDS | 469900 | 470049 |
| CDS | 470132 | 470320 |
| CDS | 470395 | 470577 |
| CDS | 470675 | 470790 |
| CDS | 470869 | 471016 |
| CDS | 471119 | 471289 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16420.4 | ATG7_N | 22 | 313 |
| PF00899.20 | ThiF | 345 | 580 |
| PF00899.20 | ThiF | 683 | 952 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Regulation of autophagy | autophagy-related protein 7 | K08337 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005737 | cytoplasm |
| GO:0006914 | autophagy |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.