PH01000712G0320's details annotation
1.Annotation
ICBR annotation: embryogenesis transmembrane protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000712
Strand: -
| Region | Start | End |
| gene | 186642 | 189816 |
| mRNA | 186642 | 189816 |
| exon | 186642 | 186875 |
| exon | 186916 | 188915 |
| exon | 189579 | 189816 |
| CDS | 186870 | 186875 |
| CDS | 186916 | 188915 |
| CDS | 189579 | 189777 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13962.5 | PGG | 100 | 209 |
| PF13962.5 | PGG | 254 | 365 |
| PF13962.5 | PGG | 436 | 549 |
| PF13962.5 | PGG | 623 | 732 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.