PH01000712G0460's details annotation
1.Annotation
ICBR annotation: strictosidine synthase, putative, expressed
Blast result AT3G57030 : 5.50E-91
Blast annotation: Calcium-dependent phosphotriesterase superfamily protein
2.Location
Scaffold: PH01000712
Strand: -
| Region | Start | End |
| gene | 308425 | 310992 |
| mRNA | 308425 | 310992 |
| exon | 308425 | 309789 |
| exon | 309937 | 310203 |
| exon | 310659 | 310992 |
| CDS | 309213 | 309789 |
| CDS | 309937 | 310203 |
| CDS | 310659 | 310921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000926 | strictosidine synthase activity, ATPase activity, biosynthetic process, transcription_corepressor_activity nucleoside-triphosphatase activity, peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated response to hormone stimulus, nucleotide binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03088.15 | Str_synth | 154 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
| GO:0016844 | strictosidine synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.