Annotation of co-expression genes

PH01000716G0820's details annotation

1.Annotation

ICBR annotation: OsWRKY4 - Superfamily of TFs having WRKY and zinc finger domains

Blast result AT3G01080 : 1.10E-29
Blast annotation: WRKY DNA-binding protein 58

2.Location

Scaffold: PH01000716
Strand: +

RegionStartEnd
gene532132534846
mRNA532132534846
exon532132532744
exon533361533953
exon534287534430
exon534538534846
CDS532496532744
CDS533361533953
CDS534287534430
CDS534538534790

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000298WRKY Transcription_Regulator(from PlantTFDB)
Rho guanyl-nucleotide exchange factor activity,
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
regulation of transcription, DNA-dependent,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)WRKY
Transcription_Regulator(from PlantTFDB)WRKY

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03106.14WRKY173229
PF03106.14WRKY309365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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