PH01000720G0650's details annotation
1.Annotation
ICBR annotation: HD domain containing protein, putative, expressed
Blast result AT3G14050 : 0.00E+00
Blast annotation: RELA/SPOT homolog 2
2.Location
Scaffold: PH01000720
Strand: +
| Region | Start | End |
| gene | 487486 | 492718 |
| mRNA | 487486 | 492718 |
| exon | 487486 | 488942 |
| exon | 489062 | 489247 |
| exon | 490001 | 490461 |
| exon | 490566 | 490724 |
| exon | 490796 | 491147 |
| exon | 491262 | 491500 |
| exon | 491758 | 491863 |
| exon | 491992 | 492105 |
| exon | 492151 | 492718 |
| CDS | 488295 | 488942 |
| CDS | 489062 | 489247 |
| CDS | 490001 | 490461 |
| CDS | 490566 | 490724 |
| CDS | 490796 | 491147 |
| CDS | 491262 | 491500 |
| CDS | 491758 | 491863 |
| CDS | 491992 | 492105 |
| CDS | 492151 | 492345 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13328.5 | HD_4 | 209 | 359 |
| PF04607.16 | RelA_SpoT | 418 | 527 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0015969 | guanosine tetraphosphate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.