PH01000724G0040's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Blast result AT2G17220 : 4.00E-132
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000724
Strand: +
| Region | Start | End |
| gene | 28975 | 32710 |
| mRNA | 28975 | 32710 |
| exon | 28975 | 29407 |
| exon | 30212 | 30561 |
| exon | 31169 | 31304 |
| exon | 31732 | 31874 |
| exon | 31959 | 32082 |
| exon | 32191 | 32710 |
| CDS | 29344 | 29407 |
| CDS | 30212 | 30561 |
| CDS | 31169 | 31304 |
| CDS | 31732 | 31874 |
| CDS | 31959 | 32082 |
| CDS | 32191 | 32597 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000647 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis Pantothenate_and_CoA_biosynthesis branched chain family amino acid metabolic process, AGC_RSK-2 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) iron-sulfur cluster assembly, branched-chain-amino-acid transaminase activity, |
| coexpression network | CFinderM001341 | RLK-Pelle_LRR-II (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) microtubule associated complex, protein phosphorylation, microtubule-based movement, |
| coexpression network | CFinderM001880 | RNA_transport C2H2 Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 89 | 366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.