Annotation of co-expression genes

PH01000726G0550's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase AFC3, putative, expressed

Blast result AT4G32660 : 6.00E-104
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000726
Strand: -

RegionStartEnd
gene361331365859
mRNA361331365859
exon361331363050
exon363361363538
exon363637363728
exon363850363964
exon364283364331
exon364417364570
exon364662364688
exon365209365299
exon365400365859
CDS363034363050
CDS363361363538
CDS363637363728
CDS363850363964
CDS364283364331
CDS364417364570
CDS364662364688
CDS365209365299
CDS365400365477

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase57254

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.