Annotation of co-expression genes

PH01000726G0840's details annotation

1.Annotation

ICBR annotation: methyltransferase, putative, expressed

Blast result AT5G10830 : 1.20E-84
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.Location

Scaffold: PH01000726
Strand: -

RegionStartEnd
gene548362551034
mRNA548362551034
exon548362548821
exon548900549243
exon549335551034
CDS548527548821
CDS548900549243
CDS549335549484

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000181

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08241.11Methyltransf_1139134

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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