PH01000727G0540's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT1G68640 : 3.00E-112
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000727
Strand: +
| Region | Start | End |
| gene | 404605 | 411057 |
| mRNA | 404605 | 411057 |
| exon | 404605 | 405243 |
| exon | 405884 | 406066 |
| exon | 406167 | 406247 |
| exon | 406364 | 406423 |
| exon | 407029 | 407106 |
| exon | 407202 | 407259 |
| exon | 408000 | 408271 |
| exon | 408376 | 408627 |
| exon | 408752 | 408876 |
| exon | 409786 | 409836 |
| exon | 410217 | 410282 |
| exon | 410337 | 411057 |
| CDS | 405214 | 405243 |
| CDS | 405884 | 406066 |
| CDS | 406167 | 406247 |
| CDS | 406364 | 406423 |
| CDS | 407029 | 407106 |
| CDS | 407202 | 407259 |
| CDS | 408000 | 408271 |
| CDS | 408376 | 408627 |
| CDS | 408752 | 408876 |
| CDS | 409786 | 409836 |
| CDS | 410217 | 410282 |
| CDS | 410337 | 410457 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07716.14 | bZIP_2 | 96 | 140 |
| PF14144.5 | DOG1 | 182 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.