PH01000728G0010's details annotation
1.Annotation
ICBR annotation: Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
Blast result AT4G08170 : 3.10E-77
Blast annotation: Inositol 1,3,4-trisphosphate 5/6-kinase family protein
2.Location
Scaffold: PH01000728
Strand: +
| Region | Start | End |
| gene | 5842 | 13838 |
| mRNA | 5842 | 13838 |
| exon | 5842 | 7244 |
| exon | 7336 | 7471 |
| exon | 9438 | 9664 |
| exon | 10772 | 10804 |
| exon | 10948 | 11068 |
| exon | 11626 | 11718 |
| exon | 12582 | 12689 |
| exon | 12777 | 13838 |
| CDS | 7089 | 7244 |
| CDS | 7336 | 7471 |
| CDS | 9438 | 9664 |
| CDS | 10772 | 10804 |
| CDS | 10948 | 11068 |
| CDS | 11626 | 11718 |
| CDS | 12582 | 12689 |
| CDS | 12777 | 13156 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05770.10 | Ins134_P3_kin | 145 | 347 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Inositol phosphate metabolism | inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate1-kinase[EC:2.7.1.159;EC:2.7.1.134] | ko00562 | K00913 |
| Phosphatidylinositol signaling system | inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate1-kinase[EC:2.7.1.159;EC:2.7.1.134] | ko04070 | K00913 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
| GO:0005622 | intracellular |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0032957 | inositol trisphosphate metabolic process |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.