PH01000731G0510's details annotation
1.Annotation
ICBR annotation: CRP12 - Cysteine-rich family protein precursor, expressed
Blast result AT5G27830 : 4.50E-62
Blast annotation: -
2.Location
Scaffold: PH01000731
Strand: -
| Region | Start | End |
| gene | 327862 | 332984 |
| mRNA | 327862 | 332984 |
| exon | 327862 | 328506 |
| exon | 328824 | 329158 |
| exon | 329520 | 329878 |
| exon | 331248 | 331323 |
| exon | 331709 | 331771 |
| exon | 332288 | 332984 |
| CDS | 328404 | 328506 |
| CDS | 328824 | 329158 |
| CDS | 329520 | 329878 |
| CDS | 331248 | 331323 |
| CDS | 331709 | 331771 |
| CDS | 332288 | 332524 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001572 | Protein_processing_in_endoplasmic_reticulum heat shock protein binding, |
| coexpression network | CFinderM001573 | protein refolding, histone_lysine_methylation cellular protein metabolic process, histone_binding zinc ion binding, histone-lysine N-methyltransferase activity, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03024.13 | Folate_rec | 156 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.