Annotation of co-expression genes

PH01000732G0050's details annotation

1.Annotation

ICBR annotation: leucine aminopeptidase, chloroplast precursor, putative, expressed

Blast result AT4G30920 : 0.00E+00
Blast annotation: Cytosol aminopeptidase family protein

2.Location

Scaffold: PH01000732
Strand: -

RegionStartEnd
gene4000145544
mRNA4000145544
exon4000141745
exon4202942216
exon4234142401
exon4288942966
exon4315743252
exon4339043516
exon4366043885
exon4397844172
exon4426444681
exon4499445544
CDS4161741745
CDS4202942216
CDS4234142401
CDS4288942966
CDS4315743252
CDS4339043516
CDS4366043885
CDS4397844172
CDS4426444681
CDS4499445230

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02789.16Peptidase_M17_N111233
PF00883.20Peptidase_M17271576

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismleucyl aminopeptidase [EC:3.4.11.1]ko00480K01255

10.Gene Ontology

GO AccessionGO Annotation
GO:0004177aminopeptidase activity
GO:0005622intracellular
GO:0005737cytoplasm
GO:0006508proteolysis
GO:0008235metalloexopeptidase activity
GO:0019538protein metabolic process
GO:0030145manganese ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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