Annotation of co-expression genes

PH01000736G0070's details annotation

1.Annotation

ICBR annotation: ELMO/CED-12 family protein, putative, expressed

Blast result AT5G24970 : 0.00E+00
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000736
Strand: -

RegionStartEnd
gene5467167236
mRNA5467167236
exon5467155787
exon5622056311
exon5643756474
exon5821358536
exon5897559235
exon6161161760
exon6248962650
exon6293963108
exon6333163409
exon6409264249
exon6439464529
exon6488264953
exon6537065411
exon6551365756
exon6670267236
CDS5562455787
CDS5622056311
CDS5643756474
CDS5821358536
CDS5897559235
CDS6161161760
CDS6248962650
CDS6293963108
CDS6333163409
CDS6409264249
CDS6439464529
CDS6488264953
CDS6537065411
CDS6551365756
CDS6670266850

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03109.15ABC1187312

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.