PH01000736G0120's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT3G15430 : 2.00E-152
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01000736
Strand: +
| Region | Start | End |
| gene | 86351 | 92110 |
| mRNA | 86351 | 92110 |
| exon | 86351 | 87189 |
| exon | 88030 | 88239 |
| exon | 89825 | 90193 |
| exon | 90281 | 90388 |
| exon | 90606 | 92110 |
| CDS | 86878 | 87189 |
| CDS | 88030 | 88239 |
| CDS | 89825 | 90193 |
| CDS | 90281 | 90388 |
| CDS | 90606 | 90989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000646 | ion transport, Ubiquitin_mediated_proteolysis membrane, |
| coexpression network | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001301 | TALE Transcription_Regulator(from PlantTFDB) SBP Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) glycogen biosynthetic process, regulation of actin filament polymerization, cytoskeleton, |
| coexpression network | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001880 | RNA_transport C2H2 Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 188 | 238 |
| PF00415.17 | RCC1 | 241 | 292 |
| PF00415.17 | RCC1 | 296 | 335 |
| PF13540.5 | RCC1_2 | 400 | 429 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.