Annotation of co-expression genes

PH01000739G0140's details annotation

1.Annotation

ICBR annotation: protein kinase, putative

Blast result AT1G21270 : 8.10E-97
Blast annotation: wall-associated kinase 2

2.Location

Scaffold: PH01000739
Strand: +

RegionStartEnd
gene115302118775
mRNA115302118775
exon115302116036
exon116596116846
exon116973117107
exon117456118775
CDS115465116036
CDS116596116846
CDS116973117107
CDS117456118477

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind7114
PF00069.24Pkinase378634

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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