PH01000742G0730's details annotation
1.Annotation
ICBR annotation: BNR/Asp-box repeat family protein, putative, expressed
Blast result AT5G57700 : 3.00E-113
Blast annotation: BNR/Asp-box repeat family protein
2.Location
Scaffold: PH01000742
Strand: -
| Region | Start | End |
| gene | 479160 | 483991 |
| mRNA | 479160 | 483991 |
| exon | 479160 | 480029 |
| exon | 480120 | 480345 |
| exon | 480438 | 480515 |
| exon | 480643 | 480739 |
| exon | 480841 | 480968 |
| exon | 481276 | 481385 |
| exon | 483703 | 483991 |
| CDS | 479749 | 480029 |
| CDS | 480120 | 480345 |
| CDS | 480438 | 480515 |
| CDS | 480643 | 480739 |
| CDS | 480841 | 480968 |
| CDS | 481276 | 481385 |
| CDS | 483703 | 483730 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH33 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13088.5 | BNR_2 | 47 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.