PH01000743G0090's details annotation
1.Annotation
ICBR annotation: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
Blast result AT1G51690 : 4.00E-108
Blast annotation: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
2.Location
Scaffold: PH01000743
Strand: +
| Region | Start | End |
| gene | 36814 | 41054 |
| mRNA | 36814 | 41054 |
| exon | 36814 | 37166 |
| exon | 37248 | 37351 |
| exon | 37433 | 37531 |
| exon | 37622 | 37741 |
| exon | 37783 | 38031 |
| exon | 38133 | 38224 |
| exon | 38318 | 38436 |
| exon | 38549 | 38672 |
| exon | 39876 | 40002 |
| exon | 40240 | 40308 |
| exon | 40706 | 41054 |
| CDS | 36974 | 37166 |
| CDS | 37248 | 37351 |
| CDS | 37433 | 37531 |
| CDS | 37622 | 37741 |
| CDS | 37783 | 38031 |
| CDS | 38133 | 38224 |
| CDS | 38318 | 38436 |
| CDS | 38549 | 38672 |
| CDS | 39876 | 40002 |
| CDS | 40240 | 40308 |
| CDS | 40706 | 40831 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000159 | protein phosphatase type 2A complex |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
| GO:0008601 | protein phosphatase type 2A regulator activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.