Annotation of co-expression genes

PH01000744G0850's details annotation

1.Annotation

ICBR annotation: ATKINESIN-13A/KINESIN-13A, putative, expressed

Blast result AT2G47580 : 3.00E-48
Blast annotation: spliceosomal protein U1A

2.Location

Scaffold: PH01000744
Strand: -

RegionStartEnd
gene537102541069
mRNA537102541069
exon537102537976
exon538074538165
exon538929539022
exon539444539616
exon540666541069
CDS537896537976
CDS538074538165
CDS538929539022
CDS539444539616
CDS540666540774

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001372Spliceosome
GT32 GlycosylTransferases
Golgi stack,
AGC_NDR (from iTAK)
GTnc GlycosylTransferases
thiol oxidase activity,
nucleotide binding,
snRNA_binding
coexpression networkCFinderM001814Spliceosome
nucleotide binding,
snRNA_binding
nuclear mRNA splicing, via spliceosome,
phospholipid transport,
phospholipid-translocating ATPase activity,
cation transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_12494

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeU1 small nuclear ribonucleoprotein Ako03041K11091

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0000398mRNA splicing, via spliceosome
GO:0003676nucleic acid binding
GO:0017069snRNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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