PH01000746G0570's details annotation
1.Annotation
ICBR annotation: CESA4 - cellulose synthase, expressed
Blast result AT4G18780 : 0
Blast annotation: cellulose synthase family protein
2.Location
Scaffold: PH01000746
Strand: +
| Region | Start | End |
| gene | 399132 | 405874 |
| mRNA | 399132 | 405874 |
| exon | 399132 | 400576 |
| exon | 400688 | 400966 |
| exon | 401063 | 401210 |
| exon | 401954 | 402220 |
| exon | 402307 | 402649 |
| exon | 402724 | 402861 |
| exon | 403378 | 403503 |
| exon | 403599 | 403811 |
| exon | 403896 | 404142 |
| exon | 404224 | 404423 |
| exon | 404544 | 404897 |
| exon | 405634 | 405874 |
| CDS | 400414 | 400576 |
| CDS | 400688 | 400966 |
| CDS | 401063 | 401210 |
| CDS | 401954 | 402220 |
| CDS | 402307 | 402649 |
| CDS | 402724 | 402861 |
| CDS | 403378 | 403503 |
| CDS | 403599 | 403811 |
| CDS | 403896 | 404142 |
| CDS | 404224 | 404423 |
| CDS | 404544 | 404897 |
| CDS | 405634 | 405696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03552.13 | Cellulose_synt | 298 | 828 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.