PH01000747G0600's details annotation
1.Annotation
ICBR annotation: gamma response I protein, putative, expressed
Blast result AT3G52120 : 1.20E-94
Blast annotation: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
2.Location
Scaffold: PH01000747
Strand: -
| Region | Start | End |
| gene | 482294 | 487064 |
| mRNA | 482294 | 487064 |
| exon | 482294 | 482422 |
| exon | 482496 | 482689 |
| exon | 483307 | 483489 |
| exon | 483581 | 483746 |
| exon | 484779 | 484845 |
| exon | 485011 | 485137 |
| exon | 486085 | 487064 |
| CDS | 482396 | 482422 |
| CDS | 482496 | 482689 |
| CDS | 483307 | 483489 |
| CDS | 483581 | 483746 |
| CDS | 484779 | 484845 |
| CDS | 485011 | 485137 |
| CDS | 486085 | 486457 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001472 | Protein_processing_in_endoplasmic_reticulum COPI vesicle coat, membrane coat, endoplasmic reticulum, RLK-Pelle_LysM (from iTAK) Golgi-associated vesicle, structural molecule activity, cell redox homeostasis, vesicle-mediated transport, intracellular protein transport, retrograde vesicle-mediated transport, Golgi to ER, nucleotide_phosphorylation Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001557 | RLK-Pelle_LysM (from iTAK) formate-tetrahydrofolate ligase activity, phosphotransferase activity, for other substituted phosphate groups, folic acid-containing compound biosynthetic process, phospholipid biosynthetic process, One_carbon_pool_by_folate Various_types_of_N-glycan_biosynthesis Carbon_fixation_pathways_in_prokaryotes N-Glycan_biosynthesis dolichyl-diphosphooligosaccharide-protein glycotransferase activity, NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001558 | RLK-Pelle_LysM (from iTAK) retrograde vesicle-mediated transport, Golgi to ER, COPI vesicle coat, NAC Transcription_Regulator(from PlantTFDB) magnesium_ion_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01805.19 | Surp | 135 | 184 |
| PF01585.22 | G-patch | 291 | 338 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.