PH01000748G0530's details annotation
1.Annotation
ICBR annotation: STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Blast result AT3G15220 : 2.00E-122
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000748
Strand: +
| Region | Start | End |
| gene | 407488 | 415191 |
| mRNA | 407488 | 415191 |
| exon | 407488 | 407578 |
| exon | 407742 | 407853 |
| exon | 409123 | 409160 |
| exon | 409267 | 409320 |
| exon | 409361 | 409434 |
| exon | 410169 | 410247 |
| exon | 410688 | 410756 |
| exon | 410827 | 410943 |
| exon | 411054 | 411122 |
| exon | 411713 | 411792 |
| exon | 411926 | 412060 |
| exon | 412143 | 412416 |
| exon | 412490 | 412582 |
| exon | 412950 | 413074 |
| exon | 413162 | 413288 |
| exon | 413564 | 413688 |
| exon | 413786 | 413915 |
| exon | 414874 | 414918 |
| exon | 415007 | 415191 |
| CDS | 407543 | 407578 |
| CDS | 407742 | 407853 |
| CDS | 409123 | 409160 |
| CDS | 409267 | 409320 |
| CDS | 409361 | 409434 |
| CDS | 410169 | 410247 |
| CDS | 410688 | 410756 |
| CDS | 410827 | 410943 |
| CDS | 411054 | 411122 |
| CDS | 411713 | 411792 |
| CDS | 411926 | 412060 |
| CDS | 412143 | 412416 |
| CDS | 412490 | 412582 |
| CDS | 412950 | 413074 |
| CDS | 413162 | 413288 |
| CDS | 413564 | 413688 |
| CDS | 413786 | 413915 |
| CDS | 414874 | 414918 |
| CDS | 415007 | 415078 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001034 | STE_STE20-YSK (from iTAK) protein phosphatase type 2A complex, glycolipid_6-alpha-mannosyltransferase_activity GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 1 | 77 |
| PF00069.24 | Pkinase | 132 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.