PH01000750G0050's details annotation
1.Annotation
ICBR annotation: serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Blast result AT4G37930 : 0.00E+00
Blast annotation: serine transhydroxymethyltransferase 1
2.Location
Scaffold: PH01000750
Strand: -
| Region | Start | End |
| gene | 26991 | 29029 |
| mRNA | 26991 | 29029 |
| exon | 26991 | 27185 |
| exon | 27332 | 27479 |
| exon | 27551 | 27640 |
| exon | 27887 | 27964 |
| exon | 28303 | 28368 |
| exon | 28464 | 28568 |
| exon | 28708 | 29029 |
| CDS | 27034 | 27185 |
| CDS | 27332 | 27479 |
| CDS | 27551 | 27640 |
| CDS | 27887 | 27964 |
| CDS | 28303 | 28368 |
| CDS | 28464 | 28568 |
| CDS | 28708 | 28869 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00464.18 | SHMT | 51 | 448 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | glycine hydroxymethyltransferase [EC:2.1.2.1] | ko00630 | K00600 |
| Methane metabolism | glycine hydroxymethyltransferase [EC:2.1.2.1] | ko00680 | K00600 |
| 271 Glycine, serine and threonine metabolism | glycine hydroxymethyltransferase [EC:2.1.2.1] | K00600 | |
| Cyanoamino acid metabolism | glycine hydroxymethyltransferase [EC:2.1.2.1] | ko00460 | K00600 |
| One carbon pool by folate | glycine hydroxymethyltransferase [EC:2.1.2.1] | ko00670 | K00600 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004372 | glycine hydroxymethyltransferase activity |
| GO:0006544 | glycine metabolic process |
| GO:0006563 | L-serine metabolic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.