PH01000751G0410's details annotation
1.Annotation
ICBR annotation: peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Blast result AT5G13410 : 2.60E-87
Blast annotation: FKBP-like peptidyl-prolyl cis-trans isomerase family protein
2.Location
Scaffold: PH01000751
Strand: -
| Region | Start | End |
| gene | 274702 | 278578 |
| mRNA | 274702 | 278578 |
| exon | 274702 | 275089 |
| exon | 275167 | 275242 |
| exon | 275354 | 275409 |
| exon | 275678 | 275722 |
| exon | 275849 | 275929 |
| exon | 276075 | 276125 |
| exon | 276211 | 276296 |
| exon | 276966 | 277083 |
| exon | 277963 | 278578 |
| CDS | 274991 | 275089 |
| CDS | 275167 | 275242 |
| CDS | 275354 | 275409 |
| CDS | 275678 | 275722 |
| CDS | 275849 | 275929 |
| CDS | 276075 | 276125 |
| CDS | 276211 | 276296 |
| CDS | 276966 | 277083 |
| CDS | 277963 | 278034 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001314 | RLK-Pelle_LRR-I-1 (from iTAK) Tryptophan_metabolism Lysine_degradation Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, tricarboxylic acid cycle, SRP-dependent cotranslational protein targeting to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00254.27 | FKBP_C | 87 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.