PH01000753G0690's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G32820 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000753
Strand: -
| Region | Start | End |
| gene | 436029 | 453947 |
| mRNA | 436029 | 453947 |
| exon | 436029 | 437209 |
| exon | 437301 | 437385 |
| exon | 437470 | 438115 |
| exon | 438189 | 438418 |
| exon | 438637 | 438679 |
| exon | 438800 | 439188 |
| exon | 443841 | 444033 |
| exon | 444114 | 444271 |
| exon | 444406 | 444561 |
| exon | 444658 | 444868 |
| exon | 444969 | 445204 |
| exon | 445315 | 445514 |
| exon | 445733 | 445849 |
| exon | 445942 | 446089 |
| exon | 446174 | 446398 |
| exon | 447634 | 449591 |
| exon | 449774 | 449925 |
| exon | 450617 | 450657 |
| exon | 450730 | 450849 |
| exon | 452988 | 453947 |
| CDS | 436971 | 437209 |
| CDS | 437301 | 437385 |
| CDS | 437470 | 438115 |
| CDS | 438189 | 438418 |
| CDS | 438637 | 438679 |
| CDS | 438800 | 439188 |
| CDS | 443841 | 444033 |
| CDS | 444114 | 444271 |
| CDS | 444406 | 444561 |
| CDS | 444658 | 444868 |
| CDS | 444969 | 445204 |
| CDS | 445315 | 445514 |
| CDS | 445733 | 445849 |
| CDS | 445942 | 446089 |
| CDS | 446174 | 446398 |
| CDS | 447634 | 449591 |
| CDS | 449774 | 449925 |
| CDS | 450617 | 450657 |
| CDS | 450730 | 450849 |
| CDS | 452988 | 452990 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
| coexpression network | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport |
| coexpression network | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB) tRNA_3'-trailer_cleavage endoribonuclease activity, producing 5'-phosphomonoesters, regulation of transcription, DNA-dependent, sequence-specific DNA binding, RNA_transport sequence-specific DNA binding transcription factor activity, |
| coexpression network | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB) DNA photolyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.