Annotation of co-expression genes

PH01000757G0490's details annotation

1.Annotation

ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed

Blast result AT3G52200 : 6.70E-30
Blast annotation: Dihydrolipoamide acetyltransferase, long form protein

2.Location

Scaffold: PH01000757
Strand: +

RegionStartEnd
gene381875390614
mRNA381875390614
exon381875383543
exon384275384336
exon385303385352
exon385626385699
exon387341387410
exon387593387721
exon389110389170
exon389248389301
exon389395389478
exon390035390111
exon390332390614
CDS383515383543
CDS384275384336
CDS385303385352
CDS385626385699
CDS387341387410
CDS387593387721
CDS389110389170
CDS389248389301
CDS389395389478
CDS390035390111
CDS390332390373

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00364.21Biotin_lipoyl4894
PF00198.222-oxoacid_dh138230

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016746transferase activity, transferring acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.