Annotation of co-expression genes

PH01000759G0070's details annotation

1.Annotation

ICBR annotation: homeobox domain containing protein, expressed

Blast result AT5G41410 : 1.20E-69
Blast annotation: POX (plant homeobox) family protein

2.Location

Scaffold: PH01000759
Strand: -

RegionStartEnd
gene3775143538
mRNA3775143538
exon3775138931
exon3912039180
exon4006940451
exon4094340976
exon4118343538
CDS3831138931
CDS3912039180
CDS4006940451
CDS4094340976
CDS4118341838

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000024HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-BELL
Transcription_Regulator(from PlantTFDB)TALE

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07526.10POX143280
PF05920.10Homeobox_KN350389

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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