PH01000759G0160's details annotation
1.Annotation
ICBR annotation: uncharacterized Cys-rich domain containing protein, putative, expressed
Blast result AT1G63830 : 4.00E-100
Blast annotation: PLAC8 family protein
2.Location
Scaffold: PH01000759
Strand: +
| Region | Start | End |
| gene | 121653 | 125503 |
| mRNA | 121653 | 125503 |
| exon | 121653 | 122210 |
| exon | 122312 | 122333 |
| exon | 123658 | 123714 |
| exon | 123811 | 123892 |
| exon | 124612 | 124736 |
| exon | 124819 | 124837 |
| exon | 125038 | 125503 |
| CDS | 122108 | 122210 |
| CDS | 122312 | 122333 |
| CDS | 123658 | 123714 |
| CDS | 123811 | 123892 |
| CDS | 124612 | 124736 |
| CDS | 124819 | 124837 |
| CDS | 125038 | 125244 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain, RLK-Pelle_RLCK-VIIa-2 (from iTAK) STE_STE11 (from iTAK) ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.